This is a list of Burkholderia strains for which annotations and sequences can be found in the Burkholderia Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Burkholderia cenocepacia J2315 | GCF_000009485.1 latest |
- | Complete Genome | 7298 (0) | SAMEA1705928 | human | cystic fibrosis | sputum | United Kingdom: Edinburgh |
European Bioinformatics Institute
Sanger Institute
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Strain Details
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Burkholderia dolosa AU0158 (complete genome) | GCF_000959505.1 latest |
- | Complete Genome | 5641 (45) | SAMN03144971 | human | Human Clinical (cystic fibrosis patient) | USA | 472 (bcc) | Los Alamos National Laboratory |
Strain Details
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Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1 | GCF_000011545.1 latest |
- | Complete Genome | 5935 (0) | SAMEA1705938 | 10 (bpseudomallei) |
European Bioinformatics Institute
Sanger Institute
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Strain Details
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Burkholderia thailandensis E264 ATCC 700388 | GCF_000012365.1 latest |
- | Complete Genome | 5712 (0) | SAMN02604021 |
NCBI
TIGR
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Strain Details
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Burkholderia glumae BGR1 | GCF_000022645.2 latest |
- | Complete Genome | 6258 (0) | SAMN02603166 |
NCBI
Seoul National University
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Strain Details
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Burkholderia multivorans ATCC 17616 - Assembly GCF_000018505.1 | GCF_000018505.1 latest |
- | Complete Genome | 6346 (0) | SAMN00623032 | soil | 21 (bcc) |
Joint Genome Institute, U.S. Department of Energy
DOE Joint Genome Institute
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Strain Details
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Burkholderia ambifaria AMMD - Assembly GCF_000203915.1 | GCF_000203915.1 latest |
- | Complete Genome | 6530 (34) | SAMN02598309 | 77 (bcc) |
DOE Joint Genome Institute
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Strain Details
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Burkholderia cenocepacia H111 | GCF_000236215.2 latest |
- | Complete Genome | 6815 (22) | SAMEA3138403 | human | cystic fibrosis | sputum | Germany: Hannover | 1506 (bcc) |
European Bioinformatics Institute
University of Zurich
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Strain Details
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Burkholderia cenocepacia K56-2Valvano | GCF_000333155.2 latest |
19 | Contig | 6986 (84) | SAMN00255233 | human | cystic fibrosis | sputum | Canada: Toronto | 227 (bcc) | J. Craig Venter Institute |
Strain Details
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Burkholderia lata 383 | GCF_000012945.1 latest |
- | Complete Genome | 7643 (41) | SAMN02598262 | forest soil | Trinidad |
DOE Joint Genome Institute
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Strain Details
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Burkholderia mallei ATCC 23344 | GCF_000011705.1 latest |
- | Complete Genome | 5091 (0) | SAMN02603987 |
TIGR
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Strain Details
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Burkholderia pseudomallei 1026b - Assembly GCF_000260515.1 | GCF_000260515.1 latest |
- | Complete Genome | 6264 (0) | SAMN02604257 | human | septicemic melioidosis | blood | Thailand | 102 (bpseudomallei) |
NCBI
University of Washington
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Strain Details
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Burkholderia vietnamiensis G4 | GCF_000016205.1 latest |
- | Complete Genome | 7639 (0) | SAMN02598263 | USA: Florida | 60 (bcc) |
U.S. Environmental Protection Agency
DOE Joint Genome Institute
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Strain Details
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Burkholderia agricolaris | GCF_009455635.1 latest |
- | Contig | 7596 (78) | SAMN09651435 | USA: Virginia | Washington University in St. Louis |
Strain Details
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Burkholderia ambifaria | GCF_002980755.1 latest |
- | Contig | 6571 (279) | SAMN08628013 | unknown | sputum | Unknown | 925 (bcc) | JCVI |
Strain Details
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Burkholderia ambifaria | GCF_002981655.1 latest |
- | Contig | 6746 (258) | SAMN08627987 | unknown | sputum | Unknown | 282 (bcc) | JCVI |
Strain Details
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Burkholderia ambifaria | GCF_900631675.1 latest |
- | Contig | 7113 (177) | SAMEA3471192 | 165 (bcc) |
SC
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Strain Details
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Burkholderia ambifaria AMMD | GCF_000959545.1 latest |
- | Complete Genome | 6530 (34) | SAMN03140296 | Pea rhizosphere | USA: Wisconsin | 77 (bcc) | Los Alamos National Laboratory |
Strain Details
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Burkholderia ambifaria FDAARGOS_419 | GCF_002554435.1 latest |
4 | Contig | 6638 (153) | SAMN07312463 | Not Applicable | environmental | 77 (bcc) |
US Food and Drug Administration
FDA
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Strain Details
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Burkholderia ambifaria IOP40-10 | GCF_000181975.1 latest |
629 | Contig | 7034 (861) | SAMN00000046 |
Joint Genome Institute, U.S. Department of Energy
DOE Joint Genome Institute
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Strain Details
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